How can I contact the team with questions?
Please send us a message to support@cri-iatlas.org. Also consider opening a Github issue in the app repository.
How does the CRI iAtlas classifier work?
The method to classify Immune Subtypes is described at Robust classification of Immune Subtypes in Cancer | bioRxiv.
Can I use images from CRI iAtlas in my publication?
Yes! Please cite the CRI iAtlas paper (PubMed: 33214875) when you use CRI iAtlas. Eddy JA, Thorsson V, Lamb AE, Gibbs DL, Heimann C, Yu JX, Chung V, Chae Y, Dang K, Vincent BG, Shmulevich I, Guinney J. CRI iAtlas: an interactive portal for immuno-oncology research. F1000Research 2020, 9:1028.
Can I download all the data?
Yes! You can download the data in CRI iAtlas from Synapse.
Which methods were used to obtain variables?
A description of variables and methods is available in the Data Description section of the CRi iAtlas web app.
How can I learn more about the data in CRI iAtlas?
You can learn more about Cancer Genomics datasets available in CRI iAtlas in their original sources: TCGA and PCAWG. You can learn more about the Immune Checkpoint Inhibition datasets in the Datasets Overview module.
Can I add my own data to visualizations in CRI iAtlas?
We have a collection of notebooks that you can run to carry out functionality made available by the iAtlas platforms, which enables the integration of your data with what's already in iAtlas.
Can I contribute to CRI iAtlas?
Yes! If you would like to contribute code changes please follow these steps: Search the issues list in the repo. Consider opening an issue related to the suggested feature. For new code development, create a personal fork and commit new code in that fork. Propose changes via pull request of personal branches. If you want [...]
Are there CRI iAtlas resources beyond the web app?
Yes! The code for the CRI iAtlas web app is open source and available at our Github repository . We also have a collection of notebooks that you can run to carry out functionality made available by the iAtlas platform, as well as how carry out additional functions, such as enabling the integration of your [...]
How do I cite CRI iAtlas?
Please cite the CRI iAtlas paper (PubMed: 33214875) when you use CRI iAtlas. Eddy JA, Thorsson V, Lamb AE, Gibbs DL, Heimann C, Yu JX, Chung V, Chae Y, Dang K, Vincent BG, Shmulevich I, Guinney J. CRI iAtlas: an interactive portal for immuno-oncology research. F1000Research 2020, 9:1028.
